Use pandas in DLT pipeline

bulbur — Wed, 12 Jun 2024 14:22:53 GMT

Hi,

I am trying to work with pandas in a delta live table. I have created some example code:

import pandas as pd import pyspark.sql.functions as F pdf = pd.DataFrame({"A": ["foo", "foo", "foo", "foo", "foo", "bar", "bar", "bar", "bar"], "B": ["one", "one", "one", "two", "two", "one", "one", "two", "two"], "C": ["small", "large", "large", "small", "small", "large", "small", "small", "large"], "D": [1, 2, 2, 3, 3, 4, 5, 6, 7], "E": [2, 4, 5, 5, 6, 6, 8, 9, 9]}) df = spark.createDataFrame(pdf) df.write.mode('overwrite').saveAsTable('test_table') import dlt @dlt.table def dlt_test_table(): return spark.read.table('test_table') @dlt.table def dlt_test_table_pivoted(): df = dlt.read('dlt_test_table') pd_df = df.toPandas() result_df = spark.createDataFrame(pd_df) return result_df

I get the error message "ValueError: can not infer schema from empty dataset"

py4j.Py4JException: An exception was raised by the Python Proxy. Return Message: Traceback (most recent call last): File "/databricks/spark/python/lib/py4j-0.10.9.7-src.zip/py4j/clientserver.py", line 642, in _call_proxy return_value = getattr(self.pool[obj_id], method)(*params) File "/databricks/spark/python/dlt/helpers.py", line 31, in call res = self.func() File "/home/spark-1ca3adb2-007d-4985-bc8f-47/.ipykernel/66446/command--1-10634334", line 26, in dlt_test_table_pivoted result_df = spark.createDataFrame(pd_df) File "/databricks/spark/python/pyspark/instrumentation_utils.py", line 47, in wrapper res = func(*args, **kwargs) File "/databricks/spark/python/pyspark/sql/session.py", line 1504, in createDataFrame return super(SparkSession, self).createDataFrame( # type: ignore[call-overload] File "/databricks/spark/python/pyspark/sql/pandas/conversion.py", line 424, in createDataFrame return self._create_dataframe(converted_data, schema, samplingRatio, verifySchema) File "/databricks/spark/python/pyspark/sql/session.py", line 1552, in _create_dataframe jdf, struct = self._createFromLocalTrusted(map(prepare, data), schema) File "/databricks/spark/python/pyspark/sql/session.py", line 1164, in _createFromLocalTrusted data, schema = self._wrap_data_schema(data, schema) File "/databricks/spark/python/pyspark/sql/session.py", line 1102, in _wrap_data_schema struct = self._inferSchemaFromList(data, names=schema) File "/databricks/spark/python/pyspark/sql/session.py", line 967, in _inferSchemaFromList raise ValueError("can not infer schema from empty dataset") ValueError: can not infer schema from empty dataset

If I remove the conversion to pandas and just return "df" in "dlt_test_table_pivoted()" I don't get an error message.

I have seen the limitations in the documentation. It says there:

The Python table and view functions must return a DataFrame. Some functions that operate on DataFrames do not return DataFrames and should not be used. Because DataFrame transformations are executed after the full dataflow graph has been resolved, using such operations might have unintended side effects. These operations include functions such as collect(), count(), toPandas(), save(), and saveAsTable(). However, you can include these functions outside of table or view function definitions because this code is run once during the graph initialization phase.

So it was not really surpising that it didn't work. Does this mean there is no way to use pandas in a DLT pipeline?

Re: Use pandas in DLT pipeline

bulbur — Mon, 12 Aug 2024 08:52:59 GMT

I have taken the advice given by the documentation (However, you can include these functions outside of table or view function definitions because this code is run once during the graph initialization phase.) and moved the toPandas call to a function without a "@table" decorator. It is still referenced by it, so I don't know if that is the intention of the remark.

import dlt def pivot_table(spark_df): # removed the pivoting to simplify the example pdf = spark_df.toPandas() return spark.createDataFrame(pdf) @dlt.table def dlt_test_table_pivoted(): df = spark.read.table('test_table') result_df = pivot_table(df) return result_df

This does work, so I am a step further now.

But if I try to add an intermediate table function I get the same error as before ("ValueError: can not infer schema from empty dataset")

import dlt def pivot_table(spark_df): pdf = spark_df.toPandas() return spark.createDataFrame(pdf) @dlt.table def dlt_test_table(): return spark.read.table('test_table') @dlt.table def dlt_test_table_pivoted(): df = dlt.read('dlt_test_table') result_df = pivot_table(df) return result_df

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Use pandas in DLT pipeline

Re: Use pandas in DLT pipeline