Consider checking the relative paths you’re using in the %run commands, as the recent update might have changed how Databricks resolves paths for notebooks under the new Workspace/Repos structure. Instead of relying on relative paths (./), try using absolute paths to ensure the correct notebooks are referenced. You could also explore using dbutils.notebook.run() for more flexibility in specifying paths. If the issue persists, review whether the Repo folder structure update could be interfering with path resolution, and verify that each path correctly aligns with the new folder hierarchy.

Give a try and let me know how it goes.

Good day!

Regards,

Brahma