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Data transfer from AWS/Databricks to GEO repository via FTP

CM2
New Contributor

Does anyone have a Python script that runs in Databricks to transfer RNAseq data stored in AWS bucket to a public repository (GEO)? All my attempts failed, it looks like the connection between dbx and geo isn't working as expected.

1 REPLY 1

NandiniN
Databricks Employee
Databricks Employee

What is the exact error that you face? We can debug from there.

I see there are some steps shared on GEO submissions https://www.ncbi.nlm.nih.gov/geo/info/submissionftp.html 

 

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